If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ), 'gf_id' => 'HOM05D000971', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000971' ), 'data_identifier' => 'HOM05D000971', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000971', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '617', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23540' => 'bna', 'A02p37750' => 'bna', 'A02p38940' => 'bna', 'A03p02140' => 'bna', 'A03p37130' => 'bna', 'A03p47500' => 'bna', 'A03p48240' => 'bna', 'A03p52550' => 'bna', 'A03p64520' => 'bna', 'A06p38840' => 'bna', 'A06p47290' => 'bna', 'A08p36700' => 'bna', 'A09p04650' => 'bna', 'A09p24870' => 'bna', 'A09p44320' => 'bna', 'A10p03170' => 'bna', 'A10p10230' => 'bna', 'A10p17050' => 'bna', 'Aa31csc275G30' => 'aar', 'Aa31LG1G14630' => 'aar', 'Aa31LG1G20120' => 'aar', 'Aa31LG6G2970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2425' => 'aag', 'Actinidia09492' => 'ach', 'Actinidia17425' => 'ach', 'Actinidia23731' => 'ach', 'Actinidia31366' => 'ach', 'Actinidia34627' => 'ach', 'Actinidia35955' => 'ach', 'Actinidia36754' => 'ach', 'Actinidia37583' => 'ach', 'Ah.03g149060' => 'amhyb', 'Ah.14g086170' => 'amhyb', 'AL1G14480' => 'aly', 'AL5G31700' => 'aly', 'AL6G33880' => 'aly', 'AL7G33250' => 'aly', 'AL8G15570' => 'aly', 'AL8G22030' => 'aly', 'Aqoxy2G03769' => 'aox', 'Aqoxy4G00028' => 'aox', 'Aqoxy4G00164' => 'aox', 'Aqoxy6G02194' => 'aox', 'arahy.Tifrunner.gnm1.ann1.75WWIB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETEK52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5K9LY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LB653W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNY1ZH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPBR19' => 'arhy', 'AT1G04770' => 'ath', 'AT1G49940' => 'ath', 'AT3G51280' => 'ath', 'AT4G20900' => 'ath', 'AT5G22794' => 'ath', 'AT5G44330' => 'ath', 'AT5G48850' => 'ath', 'ATR0605G077' => 'atr', 'ATR0712G141' => 'atr', 'ATR0736G079' => 'atr', 'ATR1098G039' => 'atr', 'Atru.chr1.1187' => 'acertr', 'Atru.chr3.849' => 'acertr', 'Atru.chr4.1759' => 'acertr', 'Atru.chr5.2012' => 'acertr', 'AUR62002699' => 'cqu', 'AUR62003347' => 'cqu', 'AUR62008876' => 'cqu', 'AUR62029489' => 'cqu', 'AUR62030156' => 'cqu', 'AUR62031833' => 'cqu', 'AUR62043832' => 'cqu', 'BcaB01g00535' => 'bca', 'BcaB02g07157' => 'bca', 'BcaB03g13472' => 'bca', 'BcaB04g19586' => 'bca', 'BcaB04g19589' => 'bca', 'BcaB05g23629' => 'bca', 'BcaB05g25186' => 'bca', 'BcaB05g25187' => 'bca', 'BcaB07g30045' => 'bca', 'BcaC01g02283' => 'bca', 'BcaC01g02284' => 'bca', 'BcaC02g11459' => 'bca', 'BcaC03g17677' => 'bca', 'BcaC04g21048' => 'bca', 'BcaC04g21049' => 'bca', 'BcaC04g23759' => 'bca', 'BcaC04g23760' => 'bca', 'BcaC06g30728' => 'bca', 'BcaC06g30751' => 'bca', 'BcaC06g31626' => 'bca', 'BcaC06g33041' => 'bca', 'BcaC06g34568' => 'bca', 'BcaC07g36880' => 'bca', 'BcaC07g37974' => 'bca', 'BcaC09g50091' => 'bca', 'BcaNung00391' => 'bca', 'BcaNung05410' => 'bca', 'BcaNung05411' => 'bca', 'BcaNung05415' => 'bca', 'BolC1t02849H' => 'bol', 'BolC2t11753H' => 'bol', 'BolC3t18979H' => 'bol', 'BolC3t20587H' => 'bol', 'BolC4t23097H' => 'bol', 'BolC5t29075H' => 'bol', 'BolC7t43235H' => 'bol', 'BolC7t44467H' => 'bol', 'BolC7t45601H' => 'bol', 'BolC8t46956H' => 'bol', 'BolC8t48353H' => 'bol', 'BolC8t50269H' => 'bol', 'BolC9t53424H' => 'bol', 'BolC9t56461H' => 'bol', 'BraA01t02260Z' => 'bra', 'BraA01t03946Z' => 'bra', 'BraA02t08757Z' => 'bra', 'BraA03t13932Z' => 'bra', 'BraA03t14330Z' => 'bra', 'BraA06t26800Z' => 'bra', 'BraA06t27600Z' => 'bra', 'BraA07t28787Z' => 'bra', 'BraA08t35573Z' => 'bra', 'BraA09t36101Z' => 'bra', 'BraA09t39893Z' => 'bra', 'BraA10t42590Z' => 'bra', 'C01p09490' => 'bna', 'C01p27910' => 'bna', 'C01p29200' => 'bna', 'C01p30740' => 'bna', 'C02p01270' => 'bna', 'C02p56840' => 'bna', 'C03p67050' => 'bna', 'C03p83070' => 'bna', 'C04p15260' => 'bna', 'C05p02940' => 'bna', 'C07p27050' => 'bna', 'C07p39470' => 'bna', 'C07p46270' => 'bna', 'C07p51000' => 'bna', 'C08p01480' => 'bna', 'C08p26550' => 'bna', 'C08p26560' => 'bna', 'C09p04960' => 'bna', 'C09p36240' => 'bna', 'CAN.G122.8' => 'can', 'CAN.G1274.25' => 'can', 'CAN.G305.5' => 'can', 'CAN.G394.18' => 'can', 'CAN.G500.63' => 'can', 'CAN.G895.36' => 'can', 'CANSAT01G0547' => 'cansat', 'CANSAT25G3482' => 'cansat', 'CANSAT35G1512' => 'cansat', 'CANSAT78G1726' => 'cansat', 'CARHR004150' => 'chi', 'CARHR160860' => 'chi', 'CARHR182770' => 'chi', 'CARHR182870' => 'chi', 'CARHR227460' => 'chi', 'CARHR281610' => 'chi', 'Carub.0001s0401' => 'cru', 'Carub.0005s1765' => 'cru', 'Carub.0007s2053' => 'cru', 'Carub.0008s0414' => 'cru', 'Carub.0008s0858' => 'cru', 'Ca_00853_v3' => 'car', 'Ca_03625_v3' => 'car', 'Ca_05371_v3' => 'car', 'Ca_07536_v3' => 'car', 'CBR_g46247' => 'cbr', 'Cc01_g17230' => 'ccan', 'Cc03_g07400' => 'ccan', 'Cc07_g11010' => 'ccan', 'Cc09_g07650' => 'ccan', 'CDE02G2381' => 'cde', 'CDE02G4613' => 'cde', 'CDE04G2566' => 'cde', 'CDE05G0563' => 'cde', 'CDE05G1102' => 'cde', 'CDE08G0592' => 'cde', 'Cfa002557' => 'cfa', 'Cfa006996' => 'cfa', 'Cfa014887' => 'cfa', 'Cfa016792' => 'cfa', 'Ciclev10004329m.g' => 'ccl', 'Ciclev10005365m.g' => 'ccl', 'Ciclev10015091m.g' => 'ccl', 'Ciclev10021176m.g' => 'ccl', 'Ciclev10025357m.g' => 'ccl', 'CiPaw.01G118200' => 'cil', 'CiPaw.01G125000' => 'cil', 'CiPaw.03G151100' => 'cil', 'CiPaw.04G106500' => 'cil', 'CiPaw.07G060700' => 'cil', 'CiPaw.08G130100' => 'cil', 'ClCG01G020430' => 'cla', 'ClCG03G008200' => 'cla', 'ClCG05G003510' => 'cla', 'ClCG07G001850' => 'cla', 'COL.COLO4_06722' => 'col', 'COL.COLO4_13715' => 'col', 'COL.COLO4_13733' => 'col', 'COL.COLO4_20298' => 'col', 'COL.COLO4_22456' => 'col', 'Cpa.g.sc166.39' => 'cpa', 'Cpa.g.sc59.107' => 'cpa', 'Cpa.g.sc6.281' => 'cpa', 'Cpa.g.sc8.173' => 'cpa', 'CsaV3_1G037210' => 'csa', 'CsaV3_3G011170' => 'csa', 'CsaV3_3G028830' => 'csa', 'CsaV3_6G047310' => 'csa', 'CSS0002955' => 'camsi', 'CSS0021389' => 'camsi', 'CSS0036080' => 'camsi', 'DCAR_000535' => 'dca', 'DCAR_003846' => 'dca', 'DCAR_004715' => 'dca', 'DCAR_010142' => 'dca', 'DCAR_011602' => 'dca', 'DCAR_014695' => 'dca', 'Dinv04664' => 'din', 'Dinv19215' => 'din', 'Dinv19216' => 'din', 'Dinv26568' => 'din', 'Dinv33651' => 'din', 'Dinv38261' => 'din', 'Dinv40112' => 'din', 'Duzib133G0022' => 'dzi', 'Duzib138G0984' => 'dzi', 'Duzib147G0877' => 'dzi', 'Duzib192G0763' => 'dzi', 'Duzib212G0938' => 'dzi', 'Duzib235G0262' => 'dzi', 'Duzib264G0774' => 'dzi', 'ECA246G0521' => 'eca', 'ECA246G4778' => 'eca', 'ECA247G2013' => 'eca', 'ECA248G2375' => 'eca', 'EL10Ac1g01721' => 'bvu', 'EL10Ac6g15496' => 'bvu', 'EL10Ac7g17788' => 'bvu', 'EL10Ac8g19555' => 'bvu', 'Eucgr.H00085' => 'egr', 'Eucgr.H02837' => 'egr', 'Eucgr.J02462' => 'egr', 'Eucgr.K01947' => 'egr', 'Eucgr.K03603' => 'egr', 'Eucgr.K03605' => 'egr', 'Eucgr.L00875' => 'egr', 'FAN07G0521' => 'fan', 'FAN11G1806' => 'fan', 'FAN12G0958' => 'fan', 'FAN15G0545' => 'fan', 'FAN16G2017' => 'fan', 'FAN17G0555' => 'fan', 'FAN19G2392' => 'fan', 'FAN21G2247' => 'fan', 'FAN22G2388' => 'fan', 'FAN23G0535' => 'fan', 'FAN24G3228' => 'fan', 'FAN26G3068' => 'fan', 'FAN27G1153' => 'fan', 'FAN28G0109' => 'fan', 'FvH4_1g11500' => 'fve', 'FvH4_2g19310' => 'fve', 'FvH4_3g10260' => 'fve', 'FvH4_4g05910' => 'fve', 'Glyma.02G046200' => 'gma', 'Glyma.08G355800' => 'gma', 'Glyma.08G355900' => 'gma', 'Glyma.09G025500' => 'gma', 'Glyma.15G131600' => 'gma', 'Glyma.16G124700' => 'gma', 'Glyma.18G172600' => 'gma', 'Glyma.18G172800' => 'gma', 'Gohir.A05G111000' => 'ghi', 'Gohir.A07G155900' => 'ghi', 'Gohir.A10G122100' => 'ghi', 'Gohir.A11G136500' => 'ghi', 'Gohir.A11G173700' => 'ghi', 'Gohir.A11G173800' => 'ghi', 'Gohir.D05G111400' => 'ghi', 'Gohir.D07G162200' => 'ghi', 'Gohir.D10G143900' => 'ghi', 'Gohir.D11G142800' => 'ghi', 'Gohir.D11G180800' => 'ghi', 'Gohir.D11G180900' => 'ghi', 'Gorai.001G185700' => 'gra', 'Gorai.007G153100' => 'gra', 'Gorai.007G192600' => 'gra', 'Gorai.007G192700' => 'gra', 'Gorai.009G115700' => 'gra', 'Gorai.011G160800' => 'gra', 'GSVIVG01011343001' => 'vvi', 'GSVIVG01017495001' => 'vvi', 'GSVIVG01017969001' => 'vvi', 'GSVIVG01018742001' => 'vvi', 'GSVIVG01018744001' => 'vvi', 'GSVIVG01021697001' => 'vvi', 'GSVIVG01028566001' => 'vvi', 'GSVIVG01028569001' => 'vvi', 'GSVIVG01028576001' => 'vvi', 'HanXRQChr01g0022721' => 'han', 'HanXRQChr10g0279981' => 'han', 'HanXRQChr15g0468341' => 'han', 'HanXRQChr15g0483911' => 'han', 'HanXRQChr16g0523731' => 'han', 'HanXRQChr16g0531531' => 'han', 'HanXRQChr17g0554711' => 'han', 'Haze_03736' => 'cav', 'Haze_11580' => 'cav', 'Haze_19818' => 'cav', 'Haze_19821' => 'cav', 'Haze_24779' => 'cav', 'Hma1.2p1_0437F.1_g153040' => 'hma', 'Hma1.2p1_0691F.1_g204130' => 'hma', 'Hma1.2p1_0869F.1_g230730' => 'hma', 'Hma1.2p1_0947F.1_g240380' => 'hma', 'Hma1.2p1_1061F.1_g253370' => 'hma', 'HPP92_009427' => 'vpl', 'HPP92_009448' => 'vpl', 'HPP92_011030' => 'vpl', 'HPP92_012527' => 'vpl', 'HPP92_012538' => 'vpl', 'HPP92_020820' => 'vpl', 'HPP92_021235' => 'vpl', 'HPP92_021236' => 'vpl', 'HPP92_025911' => 'vpl', 'HPP92_025916' => 'vpl', 'Hund05519' => 'sun', 'Hund14059' => 'sun', 'Lalb_Chr03g0040021' => 'lal', 'Lalb_Chr03g0041871' => 'lal', 'Lalb_Chr12g0209651' => 'lal', 'Lalb_Chr16g0391371' => 'lal', 'Lalb_Chr19g0125541' => 'lal', 'Lalb_Chr20g0120121' => 'lal', 'Lj1A84T53' => 'lonja', 'Lj1C1161T7' => 'lonja', 'Lj1g0003998' => 'lja', 'Lj1g0007948' => 'lja', 'Lj2A1133T35' => 'lonja', 'Lj2A480T47' => 'lonja', 'Lj4g0022115' => 'lja', 'Lj6A615G86' => 'lonja', 'Lj6g0008031' => 'lja', 'Lsat_1_v5_gn_1_72281' => 'lsa', 'Lsat_1_v5_gn_3_41501' => 'lsa', 'Lsat_1_v5_gn_3_72560' => 'lsa', 'Lsat_1_v5_gn_5_179820' => 'lsa', 'Lsat_1_v5_gn_8_108641' => 'lsa', 'Lsat_1_v5_gn_8_108661' => 'lsa', 'Lsat_1_v5_gn_8_132041' => 'lsa', 'Lsat_1_v5_gn_9_12580' => 'lsa', 'Manes.01G147400' => 'mes', 'Manes.02G105900' => 'mes', 'Manes.03G149600' => 'mes', 'Manes.12G043901' => 'mes', 'Manes.13G044500' => 'mes', 'Manes.14G124200' => 'mes', 'Manes.15G051300' => 'mes', 'Mapoly0039s0109' => 'mpo', 'MBI02_g25364_MAGBIO' => 'mbi', 'MBI07_g00285_MAGBIO' => 'mbi', 'MBI09_g35942_MAGBIO' => 'mbi', 'MBI10_g24225_MAGBIO' => 'mbi', 'MBI10_g33985_MAGBIO' => 'mbi', 'MD02G1127900' => 'mdo', 'MD05G1178100' => 'mdo', 'MD05G1271200' => 'mdo', 'MD09G1240600' => 'mdo', 'MD10G1166300' => 'mdo', 'MD10G1251800' => 'mdo', 'MD13G1231400' => 'mdo', 'MD15G1243100' => 'mdo', 'Medtr2g030510' => 'mtr', 'Medtr7g058930' => 'mtr', 'Medtr7g059010' => 'mtr', 'Medtr8g075260' => 'mtr', 'MELO3C002823.2' => 'cme', 'MELO3C006329.2' => 'cme', 'MELO3C007922.2' => 'cme', 'MELO3C026703.2' => 'cme', 'MELO3C035499.2' => 'cme', 'Migut.D00522' => 'egut', 'Migut.H02176' => 'egut', 'Migut.M01904' => 'egut', 'Migut.N00347' => 'egut', 'Migut.N02261' => 'egut', 'MSTRG.21430' => 'ama', 'MSTRG.21953' => 'ama', 'MSTRG.2725' => 'ama', 'MSTRG.7544' => 'ama', 'Nitab4.5_0000306g0030' => 'nta', 'Nitab4.5_0000438g0190' => 'nta', 'Nitab4.5_0000766g0040' => 'nta', 'Nitab4.5_0000866g0020' => 'nta', 'Nitab4.5_0000866g0060' => 'nta', 'Nitab4.5_0001068g0030' => 'nta', 'Nitab4.5_0001892g0040' => 'nta', 'Nitab4.5_0003151g0100' => 'nta', 'Nitab4.5_0003187g0080' => 'nta', 'Nitab4.5_0003790g0050' => 'nta', 'Nitab4.5_0004340g0010' => 'nta', 'Nitab4.5_0004881g0040' => 'nta', 'Nitab4.5_0006605g0010' => 'nta', 'Nn1g07782' => 'nnu', 'Nn3g19922' => 'nnu', 'Nn5g30761' => 'nnu', 'Nn7g37640' => 'nnu', 'Nn8g40878' => 'nnu', 'Oeu014560.1' => 'oeu', 'Oeu015464.1' => 'oeu', 'Oeu015907.1' => 'oeu', 'Oeu020380.1' => 'oeu', 'Oeu026864.1' => 'oeu', 'Oeu035793.1' => 'oeu', 'Oeu036569.1' => 'oeu', 'Oeu040078.1' => 'oeu', 'Oeu040088.1' => 'oeu', 'Oeu048480.1' => 'oeu', 'Os03g0165900' => 'osa', 'Os05g0506000' => 'osa', 'Os08g0130300' => 'osa', 'Os09g0538500' => 'osa', 'Peaxi162Scf00047g01030' => 'pax', 'Peaxi162Scf00107g01115' => 'pax', 'Peaxi162Scf00328g00620' => 'pax', 'Peaxi162Scf00423g00132' => 'pax', 'Peaxi162Scf00856g00116' => 'pax', 'Peaxi162Scf00986g00223' => 'pax', 'PGR044G0833' => 'pgr', 'PGR102G0073' => 'pgr', 'PGR142G4290' => 'pgr', 'PGSC0003DMG400003424' => 'stu', 'PGSC0003DMG400003425' => 'stu', 'PGSC0003DMG400003580' => 'stu', 'PGSC0003DMG400014702' => 'stu', 'PGSC0003DMG400029628' => 'stu', 'PGSC0003DMG400030307' => 'stu', 'Phvul.003G264900' => 'pvu', 'Phvul.006G127000' => 'pvu', 'Phvul.008G123600' => 'pvu', 'Phvul.008G123700' => 'pvu', 'Potri.001G050600' => 'ptr', 'Potri.001G465401' => 'ptr', 'Potri.002G240700' => 'ptr', 'Potri.003G177600' => 'ptr', 'Potri.005G112100' => 'ptr', 'Potri.007G056500' => 'ptr', 'Potri.009G033201' => 'ptr', 'Potri.011G163500' => 'ptr', 'Pp3c24_4720' => 'ppa', 'Pp3c24_4880' => 'ppa', 'Pp3c8_7770' => 'ppa', 'Pp3c8_9550' => 'ppa', 'Pp3c8_9790' => 'ppa', 'Prupe.1G061500' => 'ppe', 'Prupe.4G091600' => 'ppe', 'Prupe.7G171000' => 'ppe', 'Prupe.8G204700' => 'ppe', 'Psat0s2561g0360' => 'psa', 'Psat0s2561g0400' => 'psa', 'Psat0s2561g0520' => 'psa', 'Psat0s349g0040' => 'psa', 'Psat1g166720' => 'psa', 'Psat3g142640' => 'psa', 'Psat3g142720' => 'psa', 'Psat3g144280' => 'psa', 'Psat4g101920' => 'psa', 'PSO017G1029' => 'pso', 'PSO144G0072' => 'pso', 'PSO170G1251' => 'pso', 'PSO170G5248' => 'pso', 'PSO311G0001' => 'pso', 'PSO357G0264' => 'pso', 'PSO541G4624' => 'pso', 'PSO675G0140' => 'pso', 'PSO675G0231' => 'pso', 'PSO675G5605' => 'pso', 'PSO675G6524' => 'pso', 'PSO675G8613' => 'pso', 'PSO675G8845' => 'pso', 'PSO700G0286' => 'pso', 'QL04p091530' => 'qlo', 'QL04p092914' => 'qlo', 'QL05p050580' => 'qlo', 'QL05p050602' => 'qlo', 'QL05p050645' => 'qlo', 'QL05p050713' => 'qlo', 'QL05p062765' => 'qlo', 'QL06p023657' => 'qlo', 'QL06p051036' => 'qlo', 'RcHm_v2.0_Chr2g0099121' => 'rch', 'RcHm_v2.0_Chr4g0397051' => 'rch', 'RcHm_v2.0_Chr5g0016521' => 'rch', 'RcHm_v2.0_Chr5g0019321' => 'rch', 'RcHm_v2.0_Chr6g0285121' => 'rch', 'Rhsim01G0257400' => 'rsi', 'Rhsim02G0163000' => 'rsi', 'Rhsim02G0163700' => 'rsi', 'Rhsim09G0051600' => 'rsi', 'Rhsim10G0209500' => 'rsi', 'Rhsim13G0044200' => 'rsi', 'Sabra01G0035400' => 'sbr', 'Sabra02G0183300' => 'sbr', 'Sabra03G0130100' => 'sbr', 'Sabra05G0091900' => 'sbr', 'Sabra07G0048300' => 'sbr', 'SalBow3G0275' => 'sbo', 'SalBow3G4207' => 'sbo', 'SalBow4G2438' => 'sbo', 'SalBow8G4876' => 'sbo', 'Sc16g0002010' => 'sci', 'Sc24g0001340' => 'sci', 'Sc24g0001350' => 'sci', 'Sc24g0003610' => 'sci', 'Sed0007291' => 'sed', 'Sed0013645' => 'sed', 'Sed0015718' => 'sed', 'Sed0017727' => 'sed', 'Sed0021247' => 'sed', 'Sed0023517' => 'sed', 'Sed0026903' => 'sed', 'SEGI_01466' => 'sgi', 'SEGI_06533' => 'sgi', 'SEGI_10051' => 'sgi', 'SEGI_13552' => 'sgi', 'SEGI_14707' => 'sgi', 'SEGI_16395' => 'sgi', 'SEGI_24831' => 'sgi', 'SEGI_32356' => 'sgi', 'SEGI_35172' => 'sgi', 'SEGI_36220' => 'sgi', 'SGA_v2.0_scaffold1G00274' => 'sas', 'SGA_v2.0_scaffold1G00718' => 'sas', 'SGA_v2.0_scaffold3G01578' => 'sas', 'SGA_v2.0_scaffold5G02795' => 'sas', 'SHI08531' => 'shi', 'SHI24804' => 'shi', 'SHI28626' => 'shi', 'SMO118G0355' => 'smo', 'SMO358G0440' => 'smo', 'Solyc02g083640.4' => 'sly', 'Solyc06g007970.3' => 'sly', 'Solyc06g075640.2' => 'sly', 'Solyc09g061700.3' => 'sly', 'Solyc09g091600.4' => 'sly', 'Sopen06g002810' => 'spe', 'Sopen06g032040' => 'spe', 'Sopen09g024690' => 'spe', 'Sopen09g034520' => 'spe', 'Sp1g03600' => 'spa', 'Sp2g09170' => 'spa', 'Sp2g19250' => 'spa', 'Sp5g10940' => 'spa', 'Sp7g18990' => 'spa', 'TAR362G0249' => 'tar', 'TAR365G0351' => 'tar', 'TAR365G0498' => 'tar', 'TAR376G0024' => 'tar', 'TAR626G0013' => 'tar', 'TAR626G0535' => 'tar', 'TAR628G1426' => 'tar', 'TAR636G1210' => 'tar', 'TAR636G3553' => 'tar', 'THA.LOC104801037' => 'tha', 'THA.LOC104802680' => 'tha', 'THA.LOC104812225' => 'tha', 'THA.LOC104816023' => 'tha', 'THA.LOC104821336' => 'tha', 'THA.LOC104821645' => 'tha', 'THA.LOC104827354' => 'tha', 'Thecc.01G015200' => 'tca', 'Thecc.01G227900' => 'tca', 'Thecc.04G209400' => 'tca', 'Thecc.06G004100' => 'tca', 'Thhalv10003212m.g' => 'esa', 'Thhalv10004656m.g' => 'esa', 'Thhalv10008052m.g' => 'esa', 'Thhalv10010403m.g' => 'esa', 'Thhalv10025164m.g' => 'esa', 'Thhalv10029521m.g' => 'esa', 'TPR.G15277' => 'tpr', 'TPR.G15286' => 'tpr', 'TPR.G18932' => 'tpr', 'TPR.G19496' => 'tpr', 'TPR.G26357' => 'tpr', 'TWI09G0439' => 'twi', 'TWI15G1104' => 'twi', 'TWI18G1383' => 'twi', 'TWI36G1601' => 'twi', 'TWI38G1004' => 'twi', 'TWI53G0653' => 'twi', 'TWI73G1250' => 'twi', 'unitig_0.g176' => 'ugi', 'unitig_52.g17191' => 'ugi', 'unitig_699.g19332' => 'ugi', 'unitig_748.g7347' => 'ugi', 'unitig_899.g14719' => 'ugi', 'vmacro00501' => 'vma', 'vmacro00502' => 'vma', 'vmacro02748' => 'vma', 'vmacro14764' => 'vma', 'vmacro22148' => 'vma', 'VMungo0251G1809' => 'vmu', 'VMungo0540G0107' => 'vmu', 'VMungo1383G0039' => 'vmu', 'VMungo1383G2285' => 'vmu', 'Zm00001eb005100' => 'zma', 'Zm00001eb103750' => 'zma', 'Zm00001eb261800' => 'zma', 'Zm00001eb292230' => 'zma', 'Zm00001eb332020' => 'zma', 'Zm00001eb403450' => 'zma' ) $gf_id = 'HOM05D000971' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000971' ) $data_identifier = 'HOM05D000971' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 3, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 14, 'qlo' => (int) 9, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 5, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 10, 'sas' => (int) 4, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403450' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1